A novel COMMD1 mutation Thr174Met associated with elevated urinary copper and signs of enhanced apoptotic cell death in a Wilson Disease patient
© Gupta et al; licensee BioMed Central Ltd. 2010
Received: 11 November 2009
Accepted: 15 June 2010
Published: 15 June 2010
Wilson disease (WD) results from accumulation of copper and caused due to mutations in ATP7B, a copper transporting ATPase. Besides regular hepatic and neurological symptoms, WD patients occasionally manifest atypical symptoms due to unknown cause. To understand the molecular etiology of atypical WD manifestations, we screened COMMD1, a gene implicated in canine copper toxicosis, in 109 WD patients including those with atypical symptoms. In a patient showing apoptotic symptoms and high urinary copper surpassing normal WD levels, we identified a novel, putative mutation in COMMD1. Two other changes were also identified in the gene. We have examined genotype-phenotype correlation between the detected changes and the atypical presentation of the WD patient.
Wilson Disease (WD) is an autosomal recessive disorder with a frequency of 1/5,000-1/30,000 live births worldwide . The disease is diagnosed on the basis of typical symptoms and conventional biochemical indicators, which include low serum concentrations of ceruloplasmin (<20 mg/dl), elevated excretion of urinary copper (>100 μg 24-hour urinary copper) and Kayser-Fleischer ring in the cornea . It is caused by mutations in the ATP7B gene, which codes for a P-type ATPase with six copper-binding regions . The protein is localized on the golgi membrane and is expressed primarily in the hepatocytes where it transports copper from cytoplasm to the bile canaliculi for excretion. In addition, the ATP7B is essential for transport of copper from the cytosol into the lumen of trans-Golgi network, where copper is utilized for biosynthetic incorporation into secretory copper-requiring enzyme, ceruloplasmin . Mutations in ATP7B impair copper export, resulting in accumulation of the same mainly in the liver and brain and also in cornea. Clinical manifestation varies from patient to patient in terms of age of onset, organs involved, severity of the disease and biochemical indications.
Although WD is an established monogenic disorder, heterogeneity in phenotype is observed even among patients harboring mutations in ATP7B that would affect the mutant protein similarly (e.g. different truncation mutations in the same region of the gene or exactly same set of mutations in two sibs); no particular phenotype can be attributed to a particular mutation . Also, some patients show symptoms atypical of WD . Such observations led to the speculation that there might be modifying loci, which modulate the phenotype resulting from the aberration in the ATP7B. One would expect that genes for proteins interacting either directly with ATP7B or influencing it indirectly might fit the role of modifier locus and genes of copper homeostasis pathway could have such potential.
One of the candidate genes which might play the role of a modifier locus is MURR1 (renamed COMMD1). In dogs, especially in Bedlington Terriers, mutation in COMMD1 causes canine toxicosis with symptoms of high hepatic copper accumulation leading to hepatitis and cirrhosis and eventual death between 2 and 6 years of age, unless treated . The causal founder mutation is a deletion of exon 2 resulting in degradation of the protein . Human COMMD1 located on chromosome 2 (2p13-p16) codes for a soluble 21-kDa protein, which is 88% identical to its canine orthologue . Though the exact cellular role of COMMD1 is still uncharacterized, it seems that it functions as a cytosolic as well as membrane associated adapter protein linking lipids with other proteins. It specifically binds phosphatidylinositol 4,5-bisphosphate (PtdIns(4,5)P2) through its C-terminal domain. In native conditions, endogenous COMMD1 forms large oligomeric complexes both in the cytosol and at the membrane; interaction with PtdIns(4,5)P2 increases the stability of oligomers . It has been also reported that COMMD1 interacts with the N-terminal domain of ATP7B  and was shown to bind copper in vitro through residues 61-154 (coded by exon 2) . Knockout of COMMD1 by siRNA leads to elevated copper retention in HEK293 . Interestingly, XIAP (X-linked Inhibitor of Apoptosis) has been observed to negatively regulate COMMD1 protein levels by the formation of K48 polyubiquitin chains on COMMD1 that promote its degradation . Recently, COMMD1 has been identified as an inhibitor of NF-κB signaling pathway . Similar to many other proteins involved in NF-κB signaling, COMMD1 also shuttles between cytoplasm and nucleus. Two highly conserved Nuclear Export Signals (NES) contained within amino acid 121-187 were identified in COMMD1 which are essential and sufficient for its nuclear export. Mutations in the NES region caused nuclear accumulation of COMMD1 and hence inhibition of NF-κB activity . Besides controlling NF-κB activity, COMMD1 also interacts with HIF-1α and inhibits its activity .
Close resemblance of copper toxicosis symptoms to Wilson disease led to the idea of examining the role of COMMD1 in WD patients particularly with atypical phenotypes [16–18]. Stuehler et al. found a correlation of early age of onset in patients harboring H1069Q homozygous mutation in ATP7B with the silent nucleotide change c.492T>C (D164D) in COMMD1 . However in a study involving a heterogeneous cohort consisting of Eastern European and Mediterranean WD patients, no correlation was found between the change c.492T>C and the age of disease onset. They also detected the change in homozygous condition among normal individuals . RNA studies to detect possible alteration of splice site, revealed no changes in RNA size for this change . In a study involving Chinese Wilson disease patients, the particular nucleotide change could not be detected . To date, studies involving COMMD1 screening in Wilson disease has failed to show any clear correlation between any nucleotide change and a disease phenotype. To identify whether any biochemical change in WD correlates with any change in COMMD1 or whether COMMD1 is mutated in atypical Wilson disease patients, we screened the three exons and a large part of the exon-intron boundaries of COMMD1 in 109 patients.
Materials and methods
Wilson disease patients, mostly with neurological problems (106 out of 109), were examined at the Movement Disorders Clinic, Bangur Institute of Neurosciences and Psychiatry, Kolkata, India with referrals being made to the Regional Institute of Ophthalmology, Kolkata and the Gastroenterology and Pediatrics Departments, SSKM Hospital, Kolkata, for ophthalmologic and hepatic cases, respectively. The diagnosis was based on (a) clinically, on the presence of neurological features like dystonia, tremor, rigidity and bradykinesia and/or hepatic features like signs and symptoms of acute or chronic liver failure, cirrhosis of liver etc., and Kayser-Fleischer (K-F) ring in the cornea; and (b) biochemically, on low serum ceruloplasmin (<20 mg/dl) and high 24-h urinary copper excretion (>100 μg) , and on CT and MRI scanning where applicable. Diagnosis was based on the entire profile, and presence or absence of any one feature did not contribute towards either diagnosis or exclusion thereof. Since most of the patients are neurologic, liver biopsy was not carried out as a diagnostic measure. On the basis of microsatellite marker and mutation analysis, we identified eight pedigrees where the younger sib was presymptomatic.
The PCR primer sequences for scanning COMMD1 gene in WD patients
Forward primer (5' - 3')
Reverse primer (5' - 3')
Amplicon size (bp)
Results and discussion
c.492 GAT>GAC (Asp164Asp)
Genotype-phenotype correlation in patients heterozygous for the COMMD1 change c.492 GAT/GAC
c.492 GAT/GAC (heterozygous)
c.492 GAT/GAC (heterozygous)
Age of onset (yrs)
History of jaundice
24 hrs Urinary copper
Dystonia, dysarthia, tremor in upper limbs
Liver function test (albumin:globulin; normal:1.7-1.9)
c.521 ACG>ATG (Thr174Met)
The nucleotide variant identified in a single WD patient represents a novel change that occurred in exon 3 of COMMD1. The change represented a nonsynonymous mutation, non-conservative in nature (i.e. polar to a non-polar residue). Evolutionary conservation of the residue (Thr) in Murr1 homologue was examined in different species and it was found that like human, chimpanzee has Threonine at the 174th amino acid position whereas in cattle and dog it is the polar Lysine residue. Additionally, the change resides in the region recently identified as the second 'Nuclear Export Signal (NES)' i.e., amino acids 168-179 . Screening the ATP7B gene revealed that the patient harbored the Wilson disease causing mutations c.813TGC>TGA (Cys271Stop) and c.2298_2299insC (Pro767Pro-fs), both resulting in nonfunctional prematurely truncated protein. It is noteworthy to mention that the father of the proband harbored the COMMD1-mutation in heterozygous condition and had normal levels of biochemical parameters and exhibited no signs or symptoms of the disease.
Signs and symptoms exhibited by the patient
The WD patient (W297, male, 9yr 6 months) was presented to the clinic with (a) difficulty in speaking and slurring of speech, (b) drooling of saliva during laughing and sleeping, and (c) abnormal posturing of all the four limbs during daily routine activities (e.g. taking food, walking and running). The patient had high neurological predominance and mild hepatic symptoms. At eight years of age he gradually developed slurring of speech and extrapyramidal features like dystonia. The defects were progressive in nature. His higher mental functions were affected and he exhibited intellectual deterioration with failing grades in school. Other complaints included focal jerky involuntary movements during sleep and he had difficulty in writing due to pain. KF ring was prominent in both the eyes. The serum ceruloplasmin of the patient was 7.0 mg/dl (normally >20 mg/dl) that further reduced to 2.5 mg/dl even after administration of the d-penicillamine for two months. It is possibly due to delayed response of the patient to chelation therapy.
The 24-hours urinary copper was excessively high - 1436 μg (normally <100 μg), which reduced to 880 μg after six months of therapy. In our patient pool the 24 hours urinary copper level ranges from 90 - 380 μg. In seven of these patients, 24-hour urinary copper levels ranged between 90-100 μg.
The clinical record of the patient shows that his two lower incisor teeth were seen within seven days of birth.
In the present scenario involving the Wilson disease patient with the putative COMMD1 mutation Thr174Met (in addition to the ATP7B mutations), we speculate that additional copper accumulation over the general WD limits is due to the presence of one mutant allele of COMMD1. This might have aggravated copper accumulation is reflected by excessive level of urinary copper.
Interestingly, Wilson disease patients do not exhibit overt clinical features indicating apoptosis. It has been reported that high copper accumulation increases XIAP-Cu interaction, eventually leading to degradation of XIAP . It has also been shown that XIAP binds to COMMD1 and regulates its cellular levels by functioning as an E3 ubiquitin ligase for this protein and promoting its proteasomal degradation . Based on these reports we speculate that the putative mutation (Thr174Met) in COMMD1 caused increased copper accumulation and hence degradation of XIAP which in turn decreased the apoptotic threshold in the patient, upregulating Caspase-3 mediated apoptosis. Dental apoptosis seems to be caspase dependent and Caspase-3 has been shown to be activated during dental apoptosis . In our patient, it is likely that lowering of apoptotic threshold and activation of Caspase-3 might have played an important role in premature development of teeth. However, in this context, it is important to mention that Bedlington Terriers with homozygous knockout of COMMD1 leading to copper toxicosis are not reported to have any defect in dentition. Therefore, to decipher underlying molecular events, appropriate experiments need to be done to examine altered apoptosis, if any, by the COMMD1 mutation and involvement of Caspase-3 in the process. It is also likely that, since COMMD1 is reported to influence other cellular pathways involving NF-κB and HIF-1α, the mutant protein might exert its effect by altering these cellular events.
To date this is the first mutation to be reported in COMMD1 which appears to influence pathogenesis of the patient involving elevated copper accumulation. It is interesting to note that despite multiple investigations to identify mutations in COMMD1, not a single disease causal mutation has been so far identified in this gene. It is likely that, mutation in COMMD1, by itself is not sufficient to cause a disease with a clinical manifestation. Alternatively, since COMMD1 is involved in multiple physiological processes, mutant COMMD1 on both the alleles might cause pre-natal fatality.
In the present case, the occurrence of the COMMD1 mutation cosegregating with the compound heterozygous ATP7B mutations appears to have enhanced Wilson disease phenotype. However, it is worth mentioning here that out of 109 patients studied, we did not find any other nucleotide variants in COMMD1 worthy to be labeled as putative mutation. This observation, along with other similar studies, suggests that the COMMD1 variants do not contribute to great phenotypic heterogeneity observed in WD.
Functional evidence for the role of the putative COMMD1 mutation in increased urinary copper as well as altered apoptosis in the WD patient would further support the study.
In this study, we report a single novel, putative mutation in COMMD1 in one WD patient with atypical features. The absence of any other prospective mutation in the gene among 108 patients suggests that COMMD1 variants do not have any major contribution towards phenotypic heterogeneity observed in WD.
The study was supported by Council of Scientific and Industrial Research (CSIR), India though research funds (CMM 0016, SIP 007 and MLP 0016) and Research Fellowship (to AG, SM, IC, MS). We thankfully acknowledge Ms Poonam Nasipuri for some technical help in the study.
- Thomas GR, Forbes JR, Roberts EA, Walshe JM, Cox DW: The Wilson disease gene: spectrum of mutations and their consequences. Nat Genet. 1995, 9: 210-217. 10.1038/ng0295-210.View ArticlePubMedGoogle Scholar
- Sternlieb I: Perspectives on Wilson's disease. Hepatology. 1990, 12: 1234-1239. 10.1002/hep.1840120526.View ArticlePubMedGoogle Scholar
- Lutsenko S, Barnes NL, Bartee MY, Dmitriev OY: Function and regulation of human copper-transporting ATPases. Physiol Rev. 2007, 87: 1011-1046. 10.1152/physrev.00004.2006.View ArticlePubMedGoogle Scholar
- Forbes JR, Hsi G, Cox DW: Role of the copper-binding domain in the copper transport function of ATP7B, the P-type ATPase defective in Wilson disease. J Biol Chem. 1999, 274: 12408-12413. 10.1074/jbc.274.18.12408.View ArticlePubMedGoogle Scholar
- Gupta A, Aikath D, Neogi R, Datta S, Basu K, Maity B, Trivedi R, Ray J, Das SK, Gangopadhyay PK: Molecular pathogenesis of Wilson disease: haplotype analysis, detection of prevalent mutations and genotype-phenotype correlation in Indian patients. Hum Genet. 2005, 118: 49-57. 10.1007/s00439-005-0007-y.View ArticlePubMedGoogle Scholar
- Aikath D, Gupta A, Chattopadhyay I, Hashmi MA, Gangopadhyay PK, Das SK, Ray K: Subcortical white matter abnormalities related to drug resistance in Wilson disease. Neurology. 2006, 67: 878-880. 10.1212/01.wnl.0000234130.27871.03.View ArticlePubMedGoogle Scholar
- Brewer GJ, Dick RD, Schall W, Yuzbasiyan-Gurkan V, Mullaney TP, Pace C, Lindgren J, Thomas M, Padgett G: Use of zinc acetate to treat copper toxicosis in dogs. J Am Vet Med Assoc. 1992, 201: 564-568.PubMedGoogle Scholar
- van De Sluis B, Rothuizen J, Pearson PL, van Oost BA, Wijmenga C: Identification of a new copper metabolism gene by positional cloning in a purebred dog population. Hum Mol Genet. 2002, 11: 165-173. 10.1093/hmg/11.2.165.View ArticlePubMedGoogle Scholar
- Burkhead JL, Morgan CT, Shinde U, Haddock G, Lutsenko S: COMMD1 forms oligomeric complexes targeted to the endocytic membranes via specific interactions with phosphatidylinositol 4,5-bisphosphate. J Biol Chem. 2009, 284: 696-707. 10.1074/jbc.M804766200.PubMed CentralView ArticlePubMedGoogle Scholar
- Tao TY, Liu F, Klomp L, Wijmenga C, Gitlin JD: The copper toxicosis gene product Murr1 directly interacts with the Wilson disease protein. J Biol Chem. 2003, 278: 41593-41596. 10.1074/jbc.C300391200.View ArticlePubMedGoogle Scholar
- Narindrasorasak S, Kulkarni P, Deschamps P, She YM, Sarkar B: Characterization and copper binding properties of human COMMD1 (MURR1). Biochemistry. 2007, 46: 3116-3128. 10.1021/bi0620656.View ArticlePubMedGoogle Scholar
- Burstein E, Ganesh L, Dick RD, van De Sluis B, Wilkinson JC, Klomp LW, Wijmenga C, Brewer GJ, Nabel GJ, Duckett CS: A novel role for XIAP in copper homeostasis through regulation of MURR1. EMBO J. 2004, 23: 244-254. 10.1038/sj.emboj.7600031.PubMed CentralView ArticlePubMedGoogle Scholar
- Ganesh L, Burstein E, Guha-Niyogi A, Louder MK, Mascola JR, Klomp LW, Wijmenga C, Duckett CS, Nabel GJ: The gene product Murr1 restricts HIV-1 replication in resting CD4+ lymphocytes. Nature. 2003, 426: 853-857. 10.1038/nature02171.View ArticlePubMedGoogle Scholar
- Muller PA, van de Sluis B, Groot AJ, Verbeek D, Vonk WI, Maine GN, Burstein E, Wijmenga C, Vooijs M, Reits E, Klomp LW: Nuclear-cytosolic transport of COMMD1 regulates NF-kappaB and HIF-1 activity. Traffic. 2009, PMID 19220812Google Scholar
- van de Sluis B, Muller P, Duran K, Chen A, Groot AJ, Klomp LW, Liu PP, Wijmenga C: Increased activity of hypoxia-inducible factor 1 is associated with early embryonic lethality in Commd1 null mice. Mol Cell Biol. 2007, 27: 4142-56. 10.1128/MCB.01932-06.PubMed CentralView ArticlePubMedGoogle Scholar
- Weiss KH, Merle U, Schaefer M, Ferenci P, Fullekrug J, Stremmel W: Copper toxicosis gene MURR1 is not changed in Wilson disease patients with normal blood ceruloplasmin levels. World J Gastroenterol. 2006, 12: 2239-2242.PubMed CentralPubMedGoogle Scholar
- Wu ZY, Zhao GX, Chen WJ, Wang N, Wan B, Lin MT, Murong SX, Yu L: Mutation analysis of 218 Chinese patients with Wilson disease revealed no correlation between the canine copper toxicosis gene MURR1 and Wilson disease. J Mol Med. 2006, 84: 438-442. 10.1007/s00109-005-0036-y.View ArticlePubMedGoogle Scholar
- Coronado VA, Bonneville JA, Nazer H, Roberts EA, Cox DW: COMMD1 (MURR1) as a candidate in patients with copper storage disease of undefined etiology. Clin Genet. 2005, 68: 548-551. 10.1111/j.1399-0004.2005.00524.x.View ArticlePubMedGoogle Scholar
- Stuehler B, Reichert J, Stremmel W, Schaefer M: Analysis of the human homologue of the canine copper toxicosis gene MURR1 in Wilson disease patients. J Mol Med. 2004, 82: 629-634. 10.1007/s00109-004-0557-9.View ArticlePubMedGoogle Scholar
- Lovicu M, Dessi V, Lepori MB, Zappu A, Zancan L, Giacchino R, Marazzi MG, Iorio R, Vegnente A, Vajro P: The canine copper toxicosis gene MURR1 is not implicated in the pathogenesis of Wilson disease. J Gastroenterol. 2006, 41: 582-587. 10.1007/s00535-006-1807-0.View ArticlePubMedGoogle Scholar
- Tatusova TA, Madden TL: BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences. FEMS microbiology letters. 1999, 174: 247-250. 10.1111/j.1574-6968.1999.tb13575.x.View ArticlePubMedGoogle Scholar
- Mufti AR, Burstein E, Csomos RA, Graf PC, Wilkinson JC, Dick RD, Challa M, Son JK, Bratton SB, Su GL: XIAP Is a copper binding protein deregulated in Wilson's disease and other copper toxicosis disorders. Mol Cell. 2006, 21: 775-785. 10.1016/j.molcel.2006.01.033.View ArticlePubMedGoogle Scholar
- Matalova E, Sharpe PT, Lakhani SA, Roth KA, Flavell RA, Setkova J, Misek I, Tucker AS: Molar tooth development in caspase-3 deficient mice. Int J Dev Biol. 2006, 50: 491-497. 10.1387/ijdb.052117em.View ArticlePubMedGoogle Scholar
This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.