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Table 2 Genotype quality control indicators

From: Association between Common Genetic Variants in the Opioid Pathway and Smoking Behaviors in Chinese Men

Gene

Genotype identifier

Chromosome position

Function

Minor allele frequency (minor allele)

p-value#

    

HapMap-CHB

Study population

 

ARRB2

rs3786047

4615098

intron

0.161 (A)

0.153 (A)

0.34

ARRB2

rs1045280

4622638

synonymous

0.167 (C)

0.155 (C)

0.30

ARRB2

rs2036657

4625159

3' near gene

0.117 (G)

0.155 (G)

0.59

HINT1

rs3852209

130496015

intron

0.225 (T)

0.211 (T)

0.73

HINT1

rs2278060

130500751

intron

0.250 (C)

0.225 (C)

0.94

OPRM1

rs1799971

154360797

missense

0.361 (G)

0.307 (G)

1

  1. #Calculated by using χ 2 test (deviation from Hardy–Weinberg conditions).