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Table 4 Haplotype frequencies from positive permutation analyses

From: The Frizzled 3 gene is associated with methamphetamine psychosis in the Japanese population

Haplotype

Frequency

Permutation p-values

Odds ratio (95%CI)

(SNP3-4-5-6)

Controls

MAP Psychosis

  

G-A-T-A

0.3523

0.4148

0.0889

 

A-G-C-G

0.3178

0.3970

0.0246

1.42 (1.14–1.76)

G-A-T-G

0.1542

0.0243

<0.00001

0.13 (0.07–0.22)

A-A-T-G

0.0382

0.0635

0.1283

 

A-G-C-A

0.0625

0.0070

0.0003

0.086 (0.03–0.24)

A-G-T-G

0.0211

0.0354

0.2791

 

G-G-C-G

0.0196

0.0379

0.1678

 

A-A-T-A

0.0169

0.0090

0.4565

 
  1. Haplotypes with overall frequencies are less than 1% were eliminated.