|
SNP IDs
|
Gene
|
Chr
|
Risk
|
Genotype frequencies
|
Risk allele
|
Allelic
|
OR
|
|---|
|
allele
|
+/+
|
+/-
|
-/-
|
+/+
|
+/-
|
-/-
|
frequencies
|
p value
|
(95% CI)
|
|---|
| | | |
+/-
|
SCZ (n = 173)
|
CON (n = 449)
|
SCZ
|
CON
|
(χ2)
|
|---|
|
rs10503253
|
CSMD1
|
8p23.2
|
A/C
|
0.06
|
0.46
|
0.49
|
0.09
|
0.46
|
0.45
|
0.29
|
0.32
|
0.22 (1.5)
|
1.19 (0.90-1.56)
|
|
rs7004633
|
MMP16
|
8q21.3
|
G/A
|
0.03
|
0.37
|
0.60
|
0.06
|
0.36
|
0.57
|
0.21
|
0.25
|
0.24 (1.4)
|
1.20 (0.89-1.61)
|
|
rs7914558
|
CNNM2
|
10q24.32
|
G/A
|
0.23
|
0.53
|
0.24
|
0.29
|
0.49
|
0.22
|
0.49
|
0.53
|
0.23 (1.4)
|
1.16 (0.91-1.49)
|
|
rs11191580
|
NT5C2
|
10q24.33
|
T/C
|
0.49
|
0.42
|
0.09
|
0.50
|
0.42
|
0.07
|
0.70
|
0.72
|
0.55 (0.4)
|
1.09 (0.83-1.43)
|
|
rs12966547
|
CCDC68
|
18q21
|
G/A
|
0.15
|
0.44
|
0.41
|
0.17
|
0.44
|
0.39
|
0.37
|
0.39
|
0.54 (0.4)
|
1.09 (0.84-1.41)
|
- Abbreviations: Chr Chromosome; SCZ patients with schizophrenia; CON healthy controls; +, risk allele; -, non-risk allele; OR odds ratio.
- For alleles, the first allele is the risk allele. All risk alleles are represented based on the previous GWAS [7].
