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Table 2 Haplotypes based on best pairs (unweighted) UNADJUSTED

From: Association of RGS4 variants with schizotypy and cognitive endophenotypes at the population level

   Rare (< 5%) ATAA GTGA  
Response N b se b se b se LR P-value
IQ (RPM) 1703 -0.626 (0.792) -0.366 (0.332) 0.265 (0.527) 0.50
SPQ total score 1211 1.214 (1.279) 0.683 (0.539) 0.424 (0.881) 0.55
SPQ cognitive/perceptual factor 1211 0.003 (0.012) 0.003 (0.005) -0.001 (0.008) 0.91
SPQ negative factor 1211 0.012 (0.013) 0.011* (0.005) 0.020* (0.009) 0.059
SPQ disorganization factor 1211 0.026 (0.021) 0.012 (0.009) 0.004 (0.014) 0.42
SPQ paranoid factor 1211 0.006 (0.019) 0.001 (0.008) -0.007 (0.013) 0.92
d'-S2B (spatial working memory) 1656 -0.047 (0.091) -0.015 (0.039) 0.146* (0.063) 0.073
d'-V2B (verbal working memory) 1583 0.017 (0.077) -0.028 (0.034) 0.015 (0.053) 0.77
Antisaccade error rate 1835 -0.023 (0.018) 0.013 (0.008) 0.013 (0.012) 0.10
  1. The reference haplotype is GGGG
  2. Shown are the coefficients of a regression model/copy of the corresponding haplotype. b, coefficient, expressing change in the response variable/haplotype copy; SE, standard error of the coefficient b; LR p value, p value for a likelihood ratio test against a constant-only model;
  3. * significantly different (p < 0.05) from the reference haplotype GGGG (the most common in the population).