Table 2 Nominal significant loci associated with four RCFT scores
From: Ocular and neural genes jointly regulate the visuospatial working memory in ADHD children
SNP | CHR | BP | A1 | Beta | P-value | Mapped genes (location) | Mapped genes (eQTL and HiC) |
|---|---|---|---|---|---|---|---|
REYDD | |||||||
 rs56111147 | 14 | 96,153,765 | C | −2.368 | 1.34E−06 | TCL1B | TCL1A, TCL6 (HiC), TCL1B (eQTL) |
 rs277785 | 8 | 94,335,268 | A | 1.36 | 4.12E−06 | LOC107986956 | C8orf87 (Hi-C) |
 rs141358499 | 6 | 28,803,174 | T | 2.914 | 6.25E−06 | NA | ZSCAN31, ZNF603P, ZSCAN8 (eQTL & HiC), AL022393.9, ZSCAN16 (HiC) |
REYDI | |||||||
 rs56111147 | 14 | 96,153,765 | C | −2.656 | 1.25E−07 | TCL1B | TCL1A, TCL6 (HiC), TCL1B (eQTL) |
 rs150898617 | 6 | 28,834,324 | A | 2.769 | 9.97E−07 | RPL13P | ZSCAN31, ZNF192P1, ZNF602P, ZSCAN16 (eQTL); RPSAP2, ZNF311, RN7SL471P (HiC) |
 rs637487 | 1 | 191,459,085 | A | −1.58 | 1.03E−06 | NA | NA |
 rs857125 | 1 | 57,205,340 | C | 1.843 | 1.70E−06 | C1orf168 | C1orf168, PRKAA2 (Hi-C) |
 rs7667462 | 4 | 153,841,204 | A | 1.293 | 4.68E−06 | FHDC1 | ARFIP1 (eQTL) |
 rs4394025 | 4 | 76,497,433 | C | −2.193 | 5.73E−06 | NA | G3BP2, CDKL2 (eQTL & HiC); C4orf26, PARM1, RCHY1, THAP6, SO1 (HiC) |
REYSD | |||||||
 rs7594919 | 2 | 207,999,571 | C | −0.648 | 3.29E−06 | KLF7 | KLF7, MIR2355 (HiC) |
 rs12981571 | 19 | 8,175,595 | C | 0.133 | 3.50E−06 | FBN3 | FBN3, CCL25, CERS4, ELAVL1 (HiC) |
 rs2778915 | 9 | 101,385,524 | C | 0.484 | 7.41E−06 | GABBR2 | GABBR2 (HiC) |
 rs12686018 | 9 | 18,879,776 | A | −0.565 | 7.59E−06 | ADAMTSL1 | NA |
 rs72909972 | 2 | 157,109,471 | C | 0.505 | 9.65E−06 | LINC01876 | NR4A2 |
REYSI | |||||||
 rs4932303 | 15 | 90,752,952 | C | 1.030 | 1.83E−06 | SEMA4B | CIB1, SEMA4B (HiC & eQTL), GABARAPL3, GDPGP1, IDH2, NGRN (HiC), ZNF774 (eQTL) |
 rs12629965 | 3 | 128,422,658 | A | −0.461 | 3.99E−06 | NA | RPN1, POU5F1P6 (eQTL) |
 rs62188624 | 2 | 208,017,033 | A | −0.651 | 4.18E−06 | KLF7 | KLF7, CREB1 (HiC) |
 rs56111147 | 14 | 96,153,765 | C | −0.785 | 5.89E−06 | TCL1B | TCL1A, TCL6 (HiC), TCL1B (eQTL) |
 rs2826536 | 21 | 22,187,947 | C | 0.415 | 6.29E−06 | NA | LINC00320, NCAM2 (HiC) |
 rs4472720 | 1 | 187,613,231 | G | −0.760 | 7.01E−06 | NA | NA |
 rs12981571 | 19 | 8,175,595 | C | 0.593 | 7.40E−06 | FBN3 | FBN3, CCL25, CERS4, ELAVL1 (HiC) |
 rs17178718 | 17 | 5,551,690 | C | 0.812 | 7.64E−06 | NA | NLRP1 (eQTL) |
 rs2761312 | 10 | 95,052,262 | C | −0.731 | 7.83E−06 | NA | MYOF (sQTL) |
 rs2088308 | 3 | 82,839,698 | A | −0.432 | 8.1E−06 | NA | NA |
 rs2705168 | 12 | 48,959,389 | G | 0.512 | 9.29E−06 | LALBA | LALBA (HiC) |
 rs7071815 | 10 | 133,871,035 | G | 0.479 | 9.65E−06 | JAKMIP3 | JAKMIP3 (HiC & eQTL) |