- Open Access
Copy number variation of the SELENBP1 gene in schizophrenia
Behavioral and Brain Functions volume 6, Article number: 40 (2010)
Schizophrenia is associated with rare copy-number (CN) mutations. Screening for such alleles genome-wide, though comprehensive, cannot study in-depth the causality of particular loci, therefore cannot provide the functional interpretation for the disease etiology. We hypothesized that CN mutations in the SELENBP1 locus could associate with the disorder and that these mutations could alter the gene product's activity in patients.
We analyzed SELENBP1 CN variation (CNV) in blood DNA from 49 schizophrenia patients and 49 controls (cohort A). Since CN of genes may vary among tissues, we investigated SELENBP1 CN in age- sex- and postmortem interval-matched cerebellar DNA samples from 14 patients and 14 controls (cohort B). Since CNV may either be de-novo or inherited we analyzed CNV of the SELENBP1 locus in blood DNA from 26 trios of schizophrenia probands and their healthy parents (cohort C). SELENBP1 mRNA levels were measured by real-time PCR.
In cohort A reduced CN of the SELENBP1 locus was found in four patients but in none of the controls. In cohort B we found reduced CN of the SELENBP1 locus in two patients but in none of the controls. In cohort C three patients exhibited drastic CN reduction, not present in their parents, indicating de-novo mutation. A reduction in SELENBP1 mRNA levels in the postmortem cerebellar samples of schizophrenia patients was found.
We report a focused study of CN mutations in the selenium binding-protein1 (SELENBP1) locus previously linked with schizophrenia. We provide evidence for recurrence of decreased CN of the SELENBP1 locus in three unrelated patients' cohorts but not in controls, raising the possibility of functional involvement of these mutations in the etiology of the disease.
Genomic deletion, duplication and insertion, designated copy number variation (CNV), are found in all human beings, could be either common, rare or de novo  and may influence gene expression and phenotypic variation [2–6]. CNV have been linked to the pathogenesis of both monogenic and complex disorders [7–13] including brain-related disorders such as schizophrenia [14–17]. Specifically, twenty five percent of subjects carrying a 3-Mb microdeletion in chromosome 22q11.2 exhibited psychiatric manifestations including autism, attention-deficit hyperactivity disorder (ADHD) and schizophrenia . Recent whole genome CNV screens revealed significant association of rare CNVs in several loci with schizophrenia [16, 19–21]. Confirmed de novo CNV mutations were significantly associated with schizophrenia and were about eight times more frequent in sporadic (but not in familial) cases of schizophrenia as compared to unaffected controls . These findings suggest that CNVs in certain loci are more prevalent in schizophrenia patients as compared to controls.
Chromosome 1q21.3 harbors known CNVs in the general population [3, 5, 22, 23]. Interestingly, the 1q21-22 region has been reported to be linked with schizophrenia with a likelihood of linkage (LOD) score of 6.5 (Brzustowicz and others, 2000). The gene encoding selenium binding protein (SELENBP)1 which has been mapped to this region has recently been reported to be associated with schizophrenia . Moreover, SELENBP1 mRNA levels were up-regulated in postmortem brain and in blood cells from schizophrenia patients [25, 26]. Indeed, selenium is implicated in neuroprotection [27–32] and selenium deficiency has been reported to be associated with increased schizophrenia rates . We therefore hypothesized that CNV including the SELENBP1 locus is associated with schizophrenia. To this end we compared blood DNA from schizophrenia patients with healthy controls originating from the same ethnicity group. Since CNV varies among tissues [34, 35] we then studied SELENBP1 CNV in postmortem cerebellum of schizophrenia patients and unrelated matched controls. Among other brain regions the cerebellum has also been implicated as involved in the pathophysiology of schizophrenia [36, 37]. Since CNV may either be de novo or inherited  we further analyzed CNV of the SELENBP1 gene in trios of schizophrenia probands and their healthy parents in whole blood DNA. In order to find out whether CNV in the SELENBP1 locus associates with the previously reported up-regulation of brain SELENBP1 in schizophrenia, we measured SELENBP1 mRNA levels in the same postmortem cerebellar specimens studied for CNV.
Materials and methods
Discovery cohort: Blood DNA samples from 49 unrelated schizophrenia patients and 49 healthy controls originated from the Bedouins of the Negev population. The samples from the patient group and from the normal controls were collected for separate previously described studies after informed consent [38–40]. The original protocols were approved by the Helsinki committee (Beer-Sheva). Another cohort was age- sex- and postmortem interval-matched cerebellar samples from 14 schizophrenia patients and 14 matched normal controls were obtained from the Victoria Brain Tissue Repository at the Mental Health Research Institute of Victoria, Melbourne, Australia. Their detailed demographic data are summarized in Table 1. Permission to carry out studies was obtained from the Ethics Committee of the Victoria Institute of Forensic Medicine and the North Western Mental Health Program Behavioural and Psychiatric Research and Ethics Committee. An unrelated replication cohort of 78 blood DNA samples from 26 unrelated schizophrenia patients and their healthy parents originated from Israeli Arabs recruited for previously described studies after informed consent [41, 42]. The original protocol was approved by the Helsinki committee (Beer-Sheva). All samples of the three cohorts became de-identified prior to our study.
DNA for the dertermination of CNV was extracted from whole blood using standard techniques (Phenol-chloroform). DNA concentration and quality was quantified using a Nanodrop ND-1000 spectrophotometer (Nanodrop Technologies, Wilmington, DE). DNA concentration was brought to 50 ng/μl for the SELENBP1 amplification and to 5 ng/μl for the Factor 8 (F8, a gene locus lacking CNV) amplification.
RNA purification and cDNA synthesis
For the determination of SELENBP1 mRNA levels RNA purification, determination of purity and concentration and cDNA synthesis were carried out as previously described .
Measurement of DNA copy number by real time PCR
Quantitative PCR was performed using the F8 gene locus as a reference for normalization of the real time PCR experiments. This gene was chosen since it does not exhibit CNV . F8 forward (CTACCATCCAGGCTGAGGTTTATG) and reverse (CACCAACAGCATGAAGACT GACA) primers were used as previously described . A fragment of 254 bp of exon 12 of the SELENBP1 gene was amplified using the forward (CCACCAGGGAAGGCTCTGTGA) and reverse (GGGTGCCAAGAGAGAGCAGAA) primers designed using the program OLIGO and based on the published DNA sequence in Genbank (NM_003944).
Real-time quantitative PCR was performed using Rotor Gene 3000 (Corbett Research, Sydney, Australia). Reactions were carried out in a final volume of 25 μl consisting of either 50 ng/μl for the SELENBP1 amplification or 5 ng/μl for Factor 8 amplification, 250 nM forward and reverse primers each and 12.5 μl ABsolute QPCR SYBR Green Mix (ABgene, Surrey, UK) including dNTPs, Taq DNA polymerase and reaction buffer. Real-time PCR assays of SELENBP1 and F8 CNV included an initial step of 15 min at 95°C to activate Taq polymerase, followed by 40 cycles comprising denaturing at 95°C for 15 sec, annealing at 58.8°C for 20 seconds and extension at 72°C for 15 sec. The reaction was concluded with 10 minutes 72°C as a final extension step. The fluorescence of the accumulating product was acquired for each cycle after an additional 5 seconds melting step at 78°C. Fluorescence monitoring occurred at regular intervals during the annealing phase and continuously throughout the melting phase. The cycle at which fluorescence exceeded background, the corrected threshold cycle (Ct), is negatively related to the initial copy number in a given DNA sample. In order to assess the relative copy numbers of SELENBP1 each of the runs included a calibration curve of both F8 and SELENBP1 using a DNA pool which included four samples having the highest Ct values. The F8 calibration curve was generated using DNA concentrations of 1 × 109, 107, 105, 104 and 103 copies/μl. Quantification of each sample was obtained by interpolation of Ct values from the generated standard curve using the Rotor-Gene software. Corrected Ct values were calculated as previously described  All assays included a no template negative control. All samples were run thrice. The presented results are the average of the three runs. Since F8 is located on chromosome X, KC ti values  of the women were corrected accordingly.
Measurement of mRNA levels by RT-real time PCR
Quantitative RT-PCR was performed using the house-keeping gene β-actin as an internal standard. β-actin forward (TCCCTGGAGAAGAGCTACG) and reverse (GTAGTTTCGTGGAT GCCACA) primers and SELENBP1 forward (TCATCAGGGAAGGCTCTGTGA) and reverse (GGGTGCCAAGAGAGAGCAGAA) primers were designed using the computer program OLIGO based on the cDNA structure of the genes published in Genebank.
SELENBP1 and β-actin first strand cDNA synthesis was carried out in separate reactions. One μg RNA was reverse transcribed into cDNA with ReverseiT 1st Strand Synthesis Kit (ABgene, Surrey, UK) for 45 min at 42°C in a final 20 μl reaction volume containing 1 μg total cellular RNA. To obtain PCR results within the linear range of detection, the cDNA products were diluted 1:5 for both SELENBP1 and β-actin. Real-time quantitative PCR was performed using Rotor Gene 3000 (Corbett Research, Sydney, Australia). Reactions were carried out in a final volume of 25 μl consisting of 2 μl purified cDNA (SELENBP1 or β-actin), 250 nM each forward and reverse primers and 12.5 βl ABsolute QPCR SYBR Green Mix (ABgene, Surrey, UK) providing dNTPs, Taq DNA polymerase and reaction buffer. SELENBP1 and β-actin real-time PCR assays included an initial 15 min at 95°C step to activate Taq polymerase, followed by 40 cycles each comprising denaturation at 95°C for 15 sec, annealing at 58°C for 20 seconds, and extension at 72°C for 15 sec. The fluorescence of the accumulating product was acquired at each cycle after an additional 5 seconds melting step at 78°C. Each sample was run three times. Final quantification of the mRNA levels was carried out as previously described .
In the CNV determination procedure normalized Ct values were not normally distributed. We thus compared the distribution of SELENBP1 normalized Ct values of schizophrenia patients in each of the three cohorts with their respective controls using Kolmogorov-Smirnov two-sample tests . This nonparametric test is sensitive to differences in parameters such as location, dispersion and skewness between distributions . Tests were performed using Systat 9.0 (Systat Software, Inc., CA, USA). As mentioned above, the third cohort was comprised of 26 triads of schizophrenia probands and their healthy parents. Each replicate of each family is designated "sample". A total of 78 samples (26 families × 3 replicates = 78 samples) were analysed using the program PRIMER v6 (PRIMER-E Ltd, Plymouth, UK). Each sample is represented as a point in a three dimentional space defined by the SELENBP1 normalized Ct values of each of the three family members. We generated a dissimilarity matrix comprising of the Euclidean distances between all possible pairwise sample comparisons after applying a by total sample standardization . Each of these dissimilarity coefficients represents the natural distance between two samples in the distribution of SELENBP1 normalized Ct values among family members . To explore the "natural groupings" of the 78 samples, we used a non-metric multi-dimensional scaling (MDS) . Our aim was to represent the 78 samples as points in low-dimensional space (i.e., 2-d) such that the relative distances apart of all points are in the same rank order as the relative dissimilarities (or distances) of the samples as measured by the dissimilarly matrix described above. A two-dimensional space representation is considered excellent when the stress value is smaller than 0.05 . To test for significant differences between families exhibiting de novo CNV of the SELENBP1 locus and those in which CNV was inherited we used an analysis of similarity test (ANOSIM) , analogous of the standard one-way analysis of variance (ANOVA), but which operates on the dissimilarity matrix described above.
Student's t-test was used to compare SELENBP1 mRNA levels (relative to β-actin) between patients and controls of the postmortem cerebellar cohort.
We assessed the variation in copy number of the SELENBP1 locus by real time PCR. Since there is no 'wild type' copy number of SELENBP1 to be used as a reference we normalized the Ct obtained from each sample by Ct of Factor 8 of the coagulation system, a locus lacking CNV and hence expected to serve as a normalizing reference for SELENBP1 copy number. We performed 3 case-control comparisons of SELENBP1 CNV pattern. Cohort A: Blood DNA from 49 schizophrenia patients and 49 healthy controls from Israeli Bedouin origin. Since copy number of genes may vary among tissues, we further investigated (Cohort B) SELENBP1 copy number in age- sex- and postmortem interval-matched cerebellar DNA samples from 14 schizophrenia patients and 14 unrelated matched controls originating from the Australian population . Since a CNV may either be de novo or be inherited we analyzed CNV of the SELENBP1 locus in blood DNA from 26 Israeli Arab trios of schizophrenia probands and their healthy parents (Cohort C) Schizophrenia-related differences in CNV of a specific locus have previously been reported either in a qualitative manner  or in a statistical supported approach . Here we report our analysis in both ways.
The distribution of the SELENBP1 normalized Ct values characterizing the schizophrenia patients was right skewed in all three cohorts, indicating that the number of cycles required to reach the same threshold level was higher (lower copy number) among some of the schizophrenia patients in each of these three unrelated sample sets. In cohort A one schizophrenia patient exhibited drastic reduction and three patients had moderately reduced gene copy number of the SELENBP1 locus which were not found in any of the control subjects (Figure 1). This qualitative phenomenon did not reflect an overall significant difference in the distribution of normalized Ct values of the SELENBP1 locus between the schizophrenia patients and the healthy controls. In the postmortem brain specimens (cohort B) a markedly reduced copy number of SELENBP1 in two schizophrenia specimens was observed (Figure 2). The distribution of the normalized Ct values of SELENBP1 differed significantly between the patient and control groups (Kolmogorov-Smirnov two-sample test, p = 0.038). To discern between inherited and de novo CNV we analyzed the triads cohort (C) (Figure 3). The distribution of the normalized Ct values of SELENBP1 in the patient group differed significantly from that characterizing the mothers (Kolmogorov-Smirnov two sample test, p = 0.012), but not the fathers (Kolmogorov-Smirnov two-sample test, p = 0.87). Three patients showed a drastically reduced copy number of SELENBP1, a phenomenon not observed in any of the healthy parents. Using an arbitrary difference of at least three normalized Ct values between the patient and both of his/her parents as de novo CNV, overall, six families of the 26 exhibited de novo CNV of the SELENBP1 locus. These six families significantly differed from the other families (ANOSIM test, Global r = 0.658, p = 0.001) (Figure 4). Three of these families were those in whom the probands had the drastically reduced copy number of the SELENBP1 locus. Taken together, rare reduction in CNV of the SELENBP1 locus was found in patients but not in controls of the three studied cohorts.
SELENBP1 mRNA levels in the postmortem cerebellar specimens studied for CNV were about 16% significantly reduced between patients and controls [controls: 0.170 + 0.02 Arbitrary Units (AU); patients 0.143 + 0.02 AU; Student's t-test, n = 14 in each diagnostic group, t = -2.18, p = 0.037] with no correlation between SELENBP1 Ct (reflecting copy number) and mRNA levels in the patient group (r = -0.02).
Recent evidence supported the involvement of CNV in the etiology of complex disorders, in general, and in schizophrenia, in particular [10, 16, 19–21, 53–55]. However, most of these reports deal with whole genome screens for CNV [16, 19–21, 54, 55] and only few concentrate on specific loci [10, 53]. The genome-wide assessment has the obvious advantage of providing concomitant evidence on multiple chromosomal loci. However, the results of the genome-wide studies [16, 19–21] suggested that the concept of rare variants with high penetrance rather than the "common disease-common variant" hypothesis is more plausible to the etiology of schizophrenia . Whereas association of common alleles could be identified by genome wide approaches, rare alleles are identified by methods which are not high throughput (such as re-sequencing of genes). When focusing on a certain candidate locus in a hypothesis-driven approach it is easier to identify rare alleles and the results obtained do not need statistical correction for multiple testing, possibly avoiding type-II error .
Here we present three replicating experiments demonstrating notable reduction in copy number of the SELENBP1 locus in nine of the patients of the three cohorts (n = 89) but not in the healthy controls (n = 115) in line with previous observations of a comparable extent of CNVs in this disorder [16, 19]. Hence, rare reduction in SELENBP1 CNVs associates with schizophrenia providing proof of concept for our working hypothesis.
Most of the probands in our triads cohort exhibited CNV patterns similar to their healthy parents, implying inherited CNV. The latter is in line with other studies suggesting that most of the CNVs are stable [1, 57]. However, six out of the 26 families exhibited de novo CNV of the SELENBP1 locus, in three of whom the probands had drastically reduced copy number. Patients with de-novo CNV differed significantly from the mothers but not from the fathers. It is noteworthy that new mutations are more common in sporadic cases of disease than in cases where patients have family history of the disease . Since the reduced copy number was totally attributed to de novo mutations in the triads it is tempting to speculate that the same phenomenon underlies the reduced copy number of the SELENBP1 locus among the patients in the two other sample sets. This assumption is supported by Xu et al  who showed that confirmed de novo CNV mutations are significantly associated with schizophrenia.
CNV of a gene is among possible mechanisms for a difference in its function [1, 59, 60]. The right-skewed distribution reflecting reduced copy number of the SELENBP1 locus in the postmortem cohort correlated with 16% reduction of SELENBP1 mRNA levels of this cohort. This result is in contrast with the previously reported elevated mRNA levels of this gene in postmortem frontal cortex of schizophrenia patients. The discrepancy may reflect differences in CNVs among tissues [34, 35] as well as documented tissue-specificity of SELENBP1 mRNA expression [61–63]. Although SELENBP1 mRNA levels of the two patients with the drastically reduced copy number of the gene's locus were below the mean of the patients' group, no linear positive correlation between the copy number and mRNA levels was obtained. It is possible that other modes of association between SELENBP1 CNV and its expression exist (e.g. a U-shaped relationship) since balanced CNVs with no functional effect in a carrier might create genomic instability only in future generations .
Conclusions and limitations
We show that the SELENBP1 locus which is present in variable copy number in the general human population exhibits reduced copy number in schizophrenia patients from three different cohorts. Our cohorts are of a small size but the replication in three different cohorts of two different tissues compensate for this limitation. Although no correlation was found between the copy number change and the expression level of SELENBP1 it is important to note that only part of SELENBP1 exon 12 was studied and therefore the borders of the SLENEBP1-associated CNV are yet to be determined. Since this CNV could encompass a much larger genomic region it is possible that other factors would be affected by the copy number reduction. The reduced copy number in only 10% of the patients implies that other factors are associated with the disease in most schizophrenia cases. The general phenomenon of chromosomal instability in brain disorders [16, 21, 65–67], especially deletions in schizophrenia [10, 19, 20], raises the possibility that genome integrity tends to be less protected in this disorder. If this is true multiple regions could be prone to copy number change in schizophrenia, which is in line with the multifactorial nature of the disease. Indeed, elevated induction of common fragile sites, which are hot spots for chromosomal changes [68, 69] have been reported in schizophrenia patients [70, 71]. Taken together, our study underlines replicated association of reduced copy number of a given locus with schizophrenia. Further studies towards identifying candidate factors in this locus to contribute to the schizophrenia phenotype are warranted.
Cantor RM, Geschwind DH: Schizophrenia: genome interrupted. Neuron. 2008, 58 (2): 165-167. 10.1016/j.neuron.2008.04.007.
Buckland PR: Polymorphically duplicated genes: their relevance to phenotypic variation in humans. Ann Med. 2003, 35 (5): 308-315. 10.1080/07853890310001276.
McCarroll SA, Hadnott TN, Perry GH, Sabeti PC, Zody MC, Barrett JC, Dallaire S, Gabriel SB, Lee C, Daly MJ, Altshuler DM, International HapMap Consortium: Common deletion polymorphisms in the human genome. Nat Genet. 2006, 38 (1): 86-92. 10.1038/ng1696.
Nguyen DQ, Webber C, Ponting CP: Bias of selection on human copy-number variants. PLoS Genet. 2006, 2 (2): e20-10.1371/journal.pgen.0020020. Epub 2006 Feb 2017
Redon R, Ishikawa S, Fitch KR, Feuk L, Perry GH, Andrews TD, Fiegler H, Shapero MH, Carson AR, Chen W, Cho EK, Dallaire S, Freeman JL, González JR, Gratacòs M, Huang J, Kalaitzopoulos D, Komura D, MacDonald JR, Marshall CR, Mei R, Montgomery L, Nishimura K, Okamura K, Shen F, Somerville MJ, Tchinda J, Valsesia A, Woodwark C, Yang F: Global variation in copy number in the human genome. Nature. 2006, 444 (7118): 444-454. 10.1038/nature05329.
Repping S, van Daalen SK, Brown LG, Korver CM, Lange J, Marszalek JD, Pyntikova T, van der Veen F, Skaletsky H, Page DC, Rozen S: High mutation rates have driven extensive structural polymorphism among human Y chromosomes. Nat Genet. 2006, 38 (4): 463-467. 10.1038/ng1754. Epub 2006 Feb 2026
Aitman TJ, Dong R, Vyse TJ, Norsworthy PJ, Johnson MD, Smith J, Mangion J, Roberton-Lowe C, Marshall AJ, Petretto E, Hodges MD, Bhangal G, Patel SG, Sheehan-Rooney K, Duda M, Cook PR, Evans DJ, Domin J, Flint J, Boyle JJ, Pusey CD, Cook HT: Copy number polymorphism in Fcgr3 predisposes to glomerulonephritis in rats and humans. Nature. 2006, 439 (7078): 851-855. 10.1038/nature04489.
de Vries BB, Pfundt R, Leisink M, Koolen DA, Vissers LE, Janssen IM, Reijmersdal S, Nillesen WM, Huys EH, Leeuw N, Smeets D, Sistermans EA, Feuth T, van Ravenswaaij-Arts CM, van Kessel AG, Schoenmakers EF, Brunner HG, Veltman JA: Diagnostic genome profiling in mental retardation. Am J Hum Genet. 2005, 77 (4): 606-616. 10.1086/491719. Epub 2005 Aug 2030
Feuk L, Marshall CR, Wintle RF, Scherer SW: Structural variants: changing the landscape of chromosomes and design of disease studies. Hum Mol Genet. 2006, 15 (Spec No 1): R57-66. 10.1093/hmg/ddl057.
Friedman JI, Vrijenhoek T, Markx S, Janssen IM, van der Vliet WA, Faas BH, Knoers NV, Cahn W, Kahn RS, Edelmann L, Davis KL, Silverman JM, Brunner HG, van Kessel AG, Wijmenga C, Ophoff RA, Veltman JA: CNTNAP2 gene dosage variation is associated with schizophrenia and epilepsy. Mol Psychiatry. 2008, 13 (3): 261-266. 10.1038/sj.mp.4002049. Epub 2007 Jul 2024
Rovelet-Lecrux A, Hannequin D, Raux G, Le Meur N, Laquerriere A, Vital A, Dumanchin C, Feuillette S, Brice A, Vercelletto M, Dubas F, Frebourg T, Campion D: APP locus duplication causes autosomal dominant early-onset Alzheimer disease with cerebral amyloid angiopathy. Nat Genet. 2006, 38 (1): 24-26. 10.1038/ng1718. Epub 2005 Dec 2020
Vissers LE, van Ravenswaaij CM, Admiraal R, Hurst JA, de Vries BB, Janssen IM, van der Vliet WA, Huys EH, de Jong PJ, Hamel BC, Schoenmakers EF, Brunner HG, Veltman JA, van Kessel AG: Mutations in a new member of the chromodomain gene family cause CHARGE syndrome. Nat Genet. 2004, 36 (9): 955-957. 10.1038/ng1407. Epub 2004 Aug 2008
Vissers LE, Veltman JA, van Kessel AG, Brunner HG: Identification of disease genes by whole genome CGH arrays. Hum Mol Genet. 2005, 14 (Spec No 2): R215-223. 10.1093/hmg/ddi268.
Chubb JE, Bradshaw NJ, Soares DC, Porteous DJ, Millar JK: The DISC locus in psychiatric illness. Mol Psychiatry. 2008, 13 (1): 36-64. 10.1038/sj.mp.4002106. Epub 2007 Oct 2002
MacIntyre DJ, Blackwood DH, Porteous DJ, Pickard BS, Muir WJ: Chromosomal abnormalities and mental illness. Mol Psychiatry. 2003, 8 (3): 275-287. 10.1038/sj.mp.4001232.
Walsh T, McClellan JM, McCarthy SE, Addington AM, Pierce SB, Cooper GM, Nord AS, Kusenda M, Malhotra D, Bhandari A, Stray SM, Rippey CF, Roccanova P, Makarov V, Lakshmi B, Findling RL, Sikich L, Stromberg T, Merriman B, Gogtay N, Butler P, Eckstrand K, Noory L, Gochman P, Long R, Chen Z, Davis S, Baker C, Eichler EE, Meltzer PS: Rare structural variants disrupt multiple genes in neurodevelopmental pathways in schizophrenia. Science. 2008, 320 (5875): 539-543. 10.1126/science.1155174. Epub 2008 Mar 2027
Wilson GM, Flibotte S, Chopra V, Melnyk BL, Honer WG, Holt RA: DNA copy-number analysis in bipolar disorder and schizophrenia reveals aberrations in genes involved in glutamate signaling. Hum Mol Genet. 2006, 15 (5): 743-749. 10.1093/hmg/ddi489. Epub 2006 Jan 2024
Cook EH, Schererq SW: Copy-number variations associated with neuropsychiatric conditions. Nature. 2008, 455 (7215): 919-923. 10.1038/nature07458.
International Schizoprenia Consortium: Rare chromosomal deletions and duplications increase risk of schizophrenia. Nature. 2008, 455 (7210): 237-241. 10.1038/nature07239. Epub 2008 Jul 2030
Stefansson H, Rujescu D, Cichon S, Pietiläinen OP, Ingason A, Steinberg S, Fossdal R, Sigurdsson E, Sigmundsson T, Buizer-Voskamp JE, Hansen T, Jakobsen KD, Muglia P, Francks C, Matthews PM, Gylfason A, Halldorsson BV, Gudbjartsson D, Thorgeirsson TE, Sigurdsson A, Jonasdottir A, Jonasdottir A, Bjornsson A, Mattiasdottir S, Blondal T, Haraldsson M, Magnusdottir BB, Giegling I, Möller HJ, Hartmann A: Large recurrent microdeletions associated with schizophrenia. Nature. 2008, 455 (7210): 232-236. 10.1038/nature07229.
Xu B, Roos JL, Levy S, van Rensburg EJ, Gogos JA, Karayiorgou M: Strong association of de novo copy number mutations with sporadic schizophrenia. Nat Genet. 2008, 40 (7): 880-885. 10.1038/ng.162. Epub 2008 May 2030
Pinto D, Marshall C, Feuk L, Scherer SW: Copy-number variation in control population cohorts. Hum Mol Genet. 2007, 16 (Spec No 2): R168-173. 10.1093/hmg/ddm241.
Wang WY, Barratt BJ, Clayton DG, Todd JA: Genome-wide association studies: theoretical and practical concerns. Nat Rev Genet. 2005, 6 (2): 109-118. 10.1038/nrg1522.
Kanazawa T, Glatt SJ, Faraone SV, Hwu HG, Yoneda H, Tsuang MT: Family-based association study of SELENBP1 in schizophrenia. Schizophr Res. 2009, 113 (2-3): 268-272. 10.1016/j.schres.2009.06.011.
Glatt SJ, Everall IP, Kremen WS, Corbeil J, Sasik R, Khanlou N, Han M, Liew CC, Tsuang MT: Comparative gene expression analysis of blood and brain provides concurrent validation of SELENBP1 up-regulation in schizophrenia. Proc Natl Acad Sci USA. 2005, 102 (43): 15533-15538. 10.1073/pnas.0507666102. Epub 12005 Oct 15513
Kanazawa T, Chana G, Glatt SJ, Mizuno H, Masliah E, Yoneda H, Tsuang MT, Everall IP: The utility of SELENBP1 gene expression as a biomarker for major psychotic disorders: Replication in schizophrenia and extension to bipolar disorder with psychosis. Am J Med Genet B Neuropsychiatr Genet. 2007, 28: 28-
Dalla Puppa L, Savaskan NE, Brauer AU, Behne D, Kyriakopoulos A: The role of selenite on microglial migration. Ann N Y Acad Sci. 2007, 1096: 179-183. 10.1196/annals.1397.084.
Imai H, Nakagawa Y: Biological significance of phospholipid hydroperoxide glutathione peroxidase (PHGPx, GPx4) in mammalian cells. Free Radic Biol Med. 2003, 34 (2): 145-169. 10.1016/S0891-5849(02)01197-8.
Ogawa A, Ogawa I, Obayashi R, Umezu K, Doi M, Hirao T: Highly Selective Thioselenation of Vinylcyclopropanes with a (PhS)(2)-(PhSe)(2) Binary System and Its Application to Thiotelluration. J Org Chem. 1999, 64 (1): 86-92. 10.1021/jo981053q.
Porciuncula LO, Rocha JB, Boeck CR, Vendite D, Souza DO: Ebselen prevents excitotoxicity provoked by glutamate in rat cerebellar granule neurons. Neurosci Lett. 2001, 299 (3): 217-220. 10.1016/S0304-3940(01)01519-1.
Saito Y, Hashimoto T, Sasaki M, Hanaoka S, Sugai K, Saito Y, Honda M, Chikuma M: Effect of selenium deficiency on cardiac function of individuals with severe disabilities under long-term tube feeding Heparin-selenocystamine conjugate with selenol groups. Dev Med Child Neurol. 1998, 40 (11): 743-748. 10.1111/j.1469-8749.1998.tb12342.x.
Yeo JE, Kang SK: Selenium effectively inhibits ROS-mediated apoptotic neural precursor cell death in vitro and in vivo in traumatic brain injury. Biochim Biophys Acta. 2007, 1772 (11-12): 1199-1210. Epub 2007 Sep 1129
Brown JS: Role of selenium and other trace elements in the geography of schizophrenia. Schizophr Bull. 1994, 20 (2): 387-398.
Bruder CE, Piotrowski A, Gijsbers AA, Andersson R, Erickson S, de Stahl TD, Menzel U, Sandgren J, von Tell D, Poplawski A, Crowley M, Crasto C, Partridge EC, Tiwari H, Allison DB, Komorowski J, van Ommen GJ, Boomsma DI, Pedersen NL, den Dunnen JT, Wirdefeldt K, Dumanski JP: Phenotypically concordant and discordant monozygotic twins display different DNA copy-number-variation profiles. Am J Hum Genet. 2008, 82 (3): 763-771. 10.1016/j.ajhg.2007.12.011. Epub 2008 Feb 2014
Flores M, Morales L, Gonzaga-Jauregui C, Dominguez-Vidana R, Zepeda C, Yanez O, Gutierrez M, Lemus T, Valle D, Avila MC, Blanco D, Medina-Ruiz S, Meza K, Ayala E, García D, Bustos P, González V, Girard L, Tusie-Luna T, Dávila G, Palacios R: Recurrent DNA inversion rearrangements in the human genome. Proc Natl Acad Sci USA. 2007, 104 (15): 6099-6106. 10.1073/pnas.0701631104. Epub 2007 Mar 6026
Kyriakopoulos M, Frangou S: Recent diffusion tensor imaging findings in early stages of schizophrenia. Curr Opin Psychiatry. 2009, 22 (2): 168-176. 10.1097/YCO.0b013e328325aa23.
Schultz SK, Andreasen NC: Schizophrenia. Lancet. 1999, 353 (9162): 1425-1430. 10.1016/S0140-6736(98)07549-7.
Buskila D, Cohen H, Neumann L, Ebstein RP: An association between fibromyalgia and the dopamine D4 receptor exon III repeat polymorphism and relationship to novelty seeking personality traits. Mol Psychiatry. 2004, 9 (8): 730-731. 10.1038/sj.mp.4001506.
Cohen H, Buskila D, Neumann L, Ebstein RP: Confirmation of an association between fibromyalgia and serotonin transporter promoter region (5- HTTLPR) polymorphism and relationship to anxiety-related personality traits. Arthritis Rheum. 2002, 46 (3): 845-847. 10.1002/art.10103.
Levine J, Belmaker RH: Genetic epidemiology of schizoprenia in Arab communities in Israel. Psychiatric and Behavioral Disorders in Israel. Edited by: Levav I. 2009, Jerusalem: Gefen Publishing House, 254-266.
Dobrusin M, Corbex M, Kremer I, Murad I, Muhaheed M, Bannoura I, Muller DJ, Schulze TG, Reshef A, Blanaru M, Gathas S, Rietschel M, Belmaker RH, Maier W, Ebstein RP: No evidence for linkage by transmission disequilibrium test analysis of microsatellite marker D22S278 and schizophrenia in a Palestinian Arab and in a German population. Am J Med Genet. 2001, 105 (4): 328-331. 10.1002/ajmg.1345.
Kremer I, Pinto M, Murad I, Muhaheed M, Bannoura I, Muller DJ, Schulze TG, Reshef A, Blanaru M, Gathas S, Goichman R, Rietschel M, Dobrusin M, Bachner-Melman R, Nemanov L, Belmaker RH, Maier W, Ebstein RP: Family-based and case-control study of catechol-O-methyltransferase in schizophrenia among Palestinian Arabs. Am J Med Genet B Neuropsychiatr Genet. 2003, 119B (1): 35-39. 10.1002/ajmg.b.20008.
Shamir A, Shaltiel G, Greenberg ML, Belmaker RH, Agam G: Lithium's effect on gene expression of inositol synthesis enzymes in mouse hippocampus; comparison with the yeast model. Mol Brain Res. 2003, 115: 104-110. 10.1016/S0169-328X(03)00120-7.
Wilke K, Duman B, Horst J: Diagnosis of haploidy and triploidy based on measurement of gene copy number by real-time PCR. Hum Mutat. 2000, 16 (5): 431-436. 10.1002/1098-1004(200011)16:5<431::AID-HUMU8>3.0.CO;2-Z.
Lachman HM, Pedrosa E, Petruolo OA, Cockerham M, Papolos A, Novak T, Papolos DF, Stopkova P: Increase in GSK3beta gene copy number variation in bipolar disorder. Am J Med Genet B Neuropsychiatr Genet. 2007, 144B (3): 259-265. 10.1002/ajmg.b.30498.
Shamir A, Shaltiel G, Levi I, Belmaker RH, Agam G: Postmortem parietal cortex TPH2 expression is not altered in schizophrenic unipolar-depressed, and bipolar patients vs control subjects. J Mol Neurosci. 2005, 26 (1): 33-37. 10.1385/JMN:26:1:033.
Sokal RR, Rohlf FJ: Biometry: the principles and practice of statistics in biological research. 1995, W.H. Freeman and Company New York, 3
Clarke KR, Gorley RN: PRIMER v6: User Manual/Tutorial. 2006, Plymouth UK.: PRIMER-E Ltd
Kruskal JB, Wish M: Multidimensional scaling. 1978, Beverley Hills CA.: Sage Publications
Clarke KR, Warwick RM: Changes in marine communities: an approach to statistical analysis and interpretation. 2001, Plymouth UK: PRIMER-E Ltd, 2
Nadri C, Dean B, Scarr E, Agam G: GSK-3 parameters in postmortem frontal cortex and hippocampus of schizophrenic patients. Schizophr Res. 2004, 71 (2-3): 377-382. 10.1016/j.schres.2004.02.020.
Vrijenhoek T, Buizer-Voskamp JE, van der Stelt I, Strengman E, Sabatti C, Geurts van Kessel A, Brunner HG, Ophoff RA, Veltman JA: Recurrent CNVs disrupt three candidate genes in schizophrenia patients. Am J Hum Genet. 2008, 83 (4): 504-510. 10.1016/j.ajhg.2008.09.011.
Flomen RH, Collier DA, Osborne S, Munro J, Breen G, St Clair D, Makoff AJ: Association study of CHRFAM7A copy number and 2 bp deletion polymorphisms with schizophrenia and bipolar affective disorder. Am J Med Genet B Neuropsychiatr Genet. 2006, 141B (6): 571-575. 10.1002/ajmg.b.30306.
Stone J: Rare chromosomal deletions and duplications increase risk of schizophrenia. Nature. 2008, 455 (7210): 237-241. 10.1038/nature07239. Epub 2008 Jul 2030
Green EK, Raybould R, Macgregor S, Gordon-Smith K, Heron J, Hyde S, Grozeva D, Hamshere M, Williams N, Owen MJ, O'Donovan MC, Jones L, Jones I, Kirov G, Craddock N: Operation of the schizophrenia susceptibility gene neuregulin 1, across traditional diagnostic boundaries to increase risk for bipolar disorder. Arch Gen Psychiatry. 2005, 62 (6): 642-648. 10.1001/archpsyc.62.6.642.
Need AC, Ge D, Weale ME, Maia J, Feng S, Heinzen EL, Shianna KV, Yoon W, Kasperaviciute D, Gennarelli M, Strittmatter WJ, Bonvicini C, Rossi G, Jayathilake K, Cola PA, McEvoy JP, Keefe RS, Fisher EM, St Jean PL, Giegling I, Hartmann AM, Möller HJ, Ruppert A, Fraser G, Crombie C, Middleton LT, St Clair D, Roses AD, Muglia P, Francks C: A genome-wide investigation of SNPs and CNVs in schizophrenia. PLoS Genet. 2009, 5 (2): e1000373-10.1371/journal.pgen.1000373. Epub 1002009 Feb 1000376
McCarroll SA: Extending genome-wide association studies to copy-number variation. Hum Mol Genet. 2008, 17 (R2): R135-142. 10.1093/hmg/ddn282.
McCarroll SA, Kuruvilla FG, Korn JM, Cawley S, Nemesh J, Wysoker A, Shapero MH, de Bakker PI, Maller JB, Kirby A, Elliott AL, Parkin M, Hubbell E, Webster T, Mei R, Veitch J, Collins PJ, Handsaker R, Lincoln S, Nizzari M, Blume J, Jones KW, Rava R, Daly MJ, Gabriel SB, Altshuler D: Integrated detection and population-genetic analysis of SNPs and copy number variation. Nat Genet. 2008, 40 (10): 1166-1174. 10.1038/ng.238. Epub 2008 Sep 1167
Aldred PM, Hollox EJ, Armour JA: Copy number polymorphism and expression level variation of the human alpha-defensin genes DEFA1 and DEFA3. Hum Mol Genet. 2005, 14 (14): 2045-2052. 10.1093/hmg/ddi209. Epub 2005 Jun 2048
Bosch N, Escaramis G, Mercader JM, Armengol L, Estivill X: Analysis of the multi-copy gene family FAM90A as a copy number variant in different ethnic backgrounds. Gene. 2008, 420 (2): 113-117. 10.1016/j.gene.2008.05.003. Epub 2008 May 2013
GeneCards Version 2. 2010, Weizmann Institute of Science:Applied Biosystems TaqMan Gene Expression Assays for SELENBP1
Lanfear J, Fleming J, Walker M, Harrison P: Different patterns of regulation of the genes encoding the closely related 56 kDa selenium- and acetaminophen-binding proteins in normal tissues and during carcinogenesis. Carcinogenesis. 1993, 14 (3): 335-340. 10.1093/carcin/14.3.335.
Zhao A, Tang H, Lu S, He R: Identification of a differentially-expressed gene in fatty liver of overfeeding geese. Acta Biochim Biophys Sin (Shanghai). 2007, 39 (9): 649-656. 10.1111/j.1745-7270.2007.00329.x.
Feuk L, Carson AR, Scherer SW: Structural variation in the human genome. Nat Rev Genet. 2006, 7 (2): 85-97. 10.1038/nrg1767.
Helbig I, Mefford HC, Sharp AJ, Guipponi M, Fichera M, Franke A, Muhle H, de Kovel C, Baker C, von Spiczak S, Kron KL, Steinich I, Kleefuss-Lie AA, Leu C, Gaus V, Schmitz B, Klein KM, Reif PS, Rosenow F, Weber Y, Lerche H, Zimprich F, Urak L, Fuchs K, Feucht M, Genton P, Thomas P, Visscher F, de Haan GJ, Møller RS: 15q13.3 microdeletions increase risk of idiopathic generalized epilepsy. Nat Genet. 2009, 41 (2): 160-162. 10.1038/ng.292. Epub 2009 Jan 2011
Porteous DJ, Thomson P, Brandon NJ, Millar JK: The genetics and biology of DISC1--an emerging role in psychosis and cognition. Biol Psychiatry. 2006, 60 (2): 123-131. 10.1016/j.biopsych.2006.04.008.
Sebat J, Lakshmi B, Malhotra D, Troge J, Lese-Martin C, Walsh T, Yamrom B, Yoon S, Krasnitz A, Kendall J, Leotta A, Pai D, Zhang R, Lee YH, Hicks J, Spence SJ, Lee AT, Puura K, Lehtimäki T, Ledbetter D, Gregersen PK, Bregman J, Sutcliffe JS, Jobanputra V, Chung W, Warburton D, King MC, Skuse D, Geschwind DH, Gilliam TC: Strong association of de novo copy number mutations with autism. Science. 2007, 316 (5823): 445-449. 10.1126/science.1138659. Epub 2007 Mar 2015
Glover TW: Common fragile sites. Cancer Lett. 2006, 232 (1): 4-12. 10.1016/j.canlet.2005.08.032. Epub 2005 Oct 2017
Glover TW, Arlt MF, Casper AM, Durkin SG: Mechanisms of common fragile site instability. Hum Mol Genet. 2005, 14 (Spec No 2): R197-205. 10.1093/hmg/ddi265.
Chen CH, Shih HH, Wang-Wuu S, Tai JJ, Wuu KD: Chromosomal fragile site expression in lymphocytes from patients with schizophrenia. Hum Genet. 1998, 103 (6): 702-706. 10.1007/s004390050894.
Demirhan O, Tastemir D, Sertdemir Y: Chromosomal fragile sites in schizophrenic patients. Genetika. 2006, 42 (7): 985-992.
The authors wish to thank their colleagues who were indispensable in the collection of the DNA samples of the three cohorts: the postmortem brain samples - B. Dean from the Rebecca L. Cooper Research Laboratories at the Mental Health Research Institute of Victoria, Australia; the blood samples - M. Rietschel and T. Schulze from the Central Institute of Mental Health, University of Heidelberg, Mannheim, Germany, supported by a grant from the Deutsche Forschungsgemeinschaft.
SA is a Levi Eshkol fellow sponsored by the Israeli Ministry of Science.
The authors declare that they have no competing interests.
SA designed and carried out the experiments and prepared the first draft of the manuscript as part of her PhD thesis. OO instructed SA in the statistical analysis. WM, RE and RHB collected the cohorts of the blood samples sponsored by their grant from the Deutsche Forschungsgemeinschaft. RHB was also involved in the initiative to study CNV in schizophrenia. DM and GA instructed SA during her PhD studies. GA and SA selected SELENBP1 as the target gene for the study. All authors read and approved the final manuscript.
About this article
Cite this article
Amar, S., Ovadia, O., Maier, W. et al. Copy number variation of the SELENBP1 gene in schizophrenia. Behav Brain Funct 6, 40 (2010). https://doi.org/10.1186/1744-9081-6-40
- Copy Number Variation
- Schizophrenia Patient
- Copy Number Change
- Healthy Parent