Table 2 SCZ-associated variants on chromosome 2-22 and the chromosome X that could meet or do not meet the criterion in the Top 45 genes at the SZGene Database (Updated Dec 23, 2011)

IL1B

2q13

rs16944

T/C*

0.6289 (N=1,718)

0.6066 (N=2,157)

1.11

0.022

ZNF804A

2q32.1

rs1344706

G/T*

0.6357 (N=6,487)

0.6032 (N=11,478)

1.14

0.033

CCKAR

4p15.2

rs1800857

C*/T

0.1666 (N=105)

0.1559 (N=93)

1.32

0.008

GABARB2

5q34

rs1816072

C/T*

0.6404 (N=1,129)

0.5935 (N=995)

1.22

0.047

rs194072

C/T*

0.8685 (N=1,137)

0.8466 (N=991)

1.20

0.022

rs6556547

T/G*

0.9444 (N=774)

0.9226 (N=620)

1.43

0.022

DTNBP1

6p23

rs3213207

G/A*

0.8891 (N=8,377)

0.8758 (N=8,886)

1.11

0.013

rs1474605

G/A*

0.8000 (N=3,710)

0.7858 (N=3,588)

1.09

0.014

HIST1H2BJ

6p22.1

rs6913660

A/C*

0.8927 (N=10,065)

0.8801 (N=34,098)

1.15

0.013

PRSS16

6p22.1

rs6932590

C/T*

0.7943 (N=7,177)

0.8058 (N=28,270)

1.16

-0.012

rs13219354

C/T*

0.9088 (N=6,478)

0.9020 (N=27,224)

1.20

0.007

PGBD1

6p22.1

rs13211507

C/T*

0.9518 (N=9,774)

0.9387 (N= 33,694)

1.23

0.013

RPP21

6p21.33

rs3130375

A/C*

0.9018 (N=2,799)

0.8634 (N=3,082)

1.41

0.038

NOTCH4

6p21.32

rs3131296

A/G*

0.8912 (N=7,156)

0.8892 (N=28,312)

1.20

0.002

rs2071287

A/G*

0.6858 (N=2,511)

0.6463 (N=2,556)

1.19

0.039

MDGA1

6p21.2

rs11759115

C/T*

0.8639 (N=1,874)

0.8379 (N=2,582)

1.23

0.026

rs12191311

T*/C

0.3619 (N=1,879)

0.3555 (N=2,605)

1.12

0.006

rs7769372

T*/C

0.2328 (N=1,915)

0.1885 (N=2,576)

1.18

0.044

AH1

6q23.3

rs2064430

T*/C

0.5672 (N=2,796)

0.5296 (N=13,494)

1.13

0.038

rs11154801

A/C*

0.6633 (N=3,298)

0.6576 (N=14,805)

1.09

0.006

C6orf217

6q23.3

rs10223338

T/C*

0.7158 (N=2,797)

0.6975 (N=13,522)

1.12

0.018

rs1475069

C*/A

0.7205 (N=3,276)

0.6976 (N=14,639)

1.14

0.023

rs9321521

A/G*

0.6755 (N=2,784)

0.6642 (N=13,311)

1.12

0.011

RELN

7q22.2

rs7341475

A/G*

0.8327 (N=3,315)

0.8110 (N=8,042)

1.14

0.022

rs262355

A*/T

0.3852 (N=1,128)

0.3563 (N=1,848)

1.14

0.029

PPP3CC

8p21.3

rs2461491

A*/G

0.4469 (N=6,287)

0.4353 (N=6,200)

1.07

0.015

rs10108011

G*/A

0.3657 (N=4,304)

0.3488 (N=4,465)

1.09

0.0170

SLC18A1

8p21.3

rs2270641

C*/A

0.3182 (N=759)

0.2802 (N=885)

1.63

0.038

NRG1

8p12

rs10503929

C/T*

0.8342 (N=3,256)

0.8118 (N=4,181)

1.14

0.022

GWA_10q26.13

10q26.11

rs17101921

A*/G

0.06667 (N=7,447)

0.04318 (N=13,039)

1.28

0.023

DRD4

11p15.5

rs4646984

S/L*

0.7750 (N=1,558)

0.7292 (N=1,499)

1.27

0.046

rs1800955

C*/T

0.4235 (N=2,450)

0.4018 (N=2,506)

1.12

0.022

TPH1

11p15.1

rs1800532

A*/C

0.4752 (N=2,416)

0.4299 (N=3,623)

1.16

0.045

rs1799913

A*/C

0.4546 (N=1,323)

0.4171 (N=2,201)

1.14

0.038

GWA_11p14.1

11p14.1

rs1602565

C*/T

0.1346 (N=5,475)

0.1152 (N=10,845)

1.19

0.019

DRD 2

11q23.1

rs6277

C*/T

0.4968 (N=3,156)

0.4527 (N=3,960)

1.40

0.044

rs6275

T*/C

0.3106 (N=2,436)

0.2927 (N=2,918)

1.15

0.018

rs1801028

G*/C

0.0245 (N=4,304)

0.0207 (N=5,920)

1.33

0.004

NRGN

11q24.2

rs12807809

C/T*

0.8403 (N=7,213)

0.8190 (N=28,490)

1.15

0.021

OPCML

11q25

rs3016384

T/C*

0.5374 (N=5,491)

0.5141 (N=10,900)

1.10

0.023

GRIN2B

12p13.1

rs1019385

T/G*

0.5604 (N=687)

0.4885 (N=650)

1.33

0.072

DAO

12q24.11

rs4623951

C/T*

0.7038 (N=1,509)

0.6788 (N=1,521)

1.14

0.025

HTR2A

13p14.13

rs6311

A*/G

0.4441 (N=2,594)

0.4115 (N=2,869)

1.21

0.033

DAOA

13q33.3

rs778293

G*/A

0.3149 (N=2,899)

0.2770 (N=3,218)

1.18

0.038

rs3916971

T/C*

0.5622 (N=844)

0.5211 (N=922)

1.19

0.041

AKT1

14q32.33

rs3803300

A*/G

0.1068 (N=1,301)

0.1039 (N=1,424)

1.36

0.003

GWA_16p13.12

16p13.12

rs7192086

T*/A

0.2701 (N=7,179)

0.2456 (N=12,623)

1.12

0.025

RPGRIP1L

16q12.2

rs9922369

A*/G

0.0403 (N=6,494)

0.0336 (N=11,449)

1.32

0.007

HP

16q22.3

Hp_1/2

1/2*

0.6208 (N=1,300)

0.5911 (N=1,976)

1.14

0.030

SRR

17p13.3

rs408067

G*/A

0.3166 (N=1,145)

0.2779 (N=1,146)

1.22

0.039

TCF4

18q21.2

rs9960767

C*/A

0.0514 (N=9,755)

0.0467 (N=33,648)

1.23

0.005

APOE

19q13.32

e4-allele

E2/3/4*

0.1391 (N=1,596)

0.1139 (N=3,038)

1.16

0.025

COMT

22q11.21

rs737865

C/T*

0.6916 (N=7,397)

0.6803 (N=10,411)

1.06

0.011

rs4818

G*/C

0.3503 (N=177)

0.3081 (N=99)

1.05

0.042